Publication

Zhuang W, Chen H, Yang M, et al.

The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication[J].

Nature genetics, 2019: 1

Shi J, Ma X, Zhang J, et al.

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet[J].

Nature communications, 2019, 10(1): 464.

Zhang L, Hu J, Han X, et al.

A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colour[J].

Nature communications, 2019, 10(1): 1494.

Yang, Xiulian, et al.

The chromosome-level quality genome provides insights into the evolution of the biosynthesis genes for aroma compounds of Osmanthus fragrans.

Horticulture Research 5.1 (2018): 72.

Sun S, Zhou Y, Chen J, et al.

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes[J]

Nature genetics, 2018, 50(9): 1289.

Xiao C L, Zhu S, He M, et al.

N6-methyladenine DNA modification in the human genome[J]

Molecular cell, 2018, 71(2): 306-318. e7.

Ling H Q, Ma B, Shi X, et al.

Genome sequence of the progenitor of wheat A subgenome Triticum urartu[J]

Nature, 2018, 557(7705): 424.

Zhao L, Song Y, Li L, et al.

The highly heterogeneous methylated genomes and diverse restriction-modification systems of bloom-forming Microcystis[J]

Harmful algae, 2018, 75: 87-93.

Gao Y, Wang H, Liu C, et al.

De novo genome assembly of the red silk cotton tree (Bombax ceiba)[J]

GigaScience, 2018, 7(5): giy051.

Liang Z, Shen L, Cui X, et al.

DNA N6-adenine methylation in Arabidopsis thaliana[J]

Mechanisms of Development, 2017 (145): S137-S138.

Liu C, Qu X, Zhou Y, et al.

OsPRR37 confers an expanded regulation of the diurnal rhythms of the transcriptome and photoperiodic flowering pathways in rice[J]

Plant, cell & environment, 2018..

Wuyun T,Wang L,Liu H,et al

The hardy rubber tree genome provides insights into the evolution of polyisoprene biosynthesis[J]

Molecular Plant,2017..

Kang X, Hu L, Shen P, et al

SMRT sequencing revealed mitogenome characteristics and mitogenome-wide DNA modification pattern in Ophiocordyceps sinensis[J]

Frontiers in Microbiology, 2017, 8: 1422..

Liu Q, Zhang P, Wang D, et al

Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing[J]

Genome Medicine,2017, 9:65..

Li Z, Long H, Zhang L, et al

The complete chloroplast genome sequence of tung tree (Vernicia fordii): Organization and phylogenetic relationships with other angiosperms[J]

Scientific Reports, 2017, 7: 1869..

Kang X, Hu Y, Hu J, et al

The mitochondrial genome of the lepidopteran host cadaver (Thitarodes sp) of Ophiocordyceps sinensis and related phylogenetic analysis[J]

Gene, 2017, 598: 32-42..

Lan H, Yang H, Li P, et al

Complete Genome Sequence of Enterobacter sp Strain ODB01, a Bacterium That Degrades Crude Oil[J]

Genome announcements, 2017, 5(10): e01763-16..

Fu X, Li J, Tian Y, et al

Long-read sequence assembly of the firefly Pyrocoelia pectoralis genome[J]

GigaScience, 2017..

Maojun Wang, et al

A global survey ofalternative splicing in allopolyploid cotton: landscape, complexity andregulation

New Phytol.2017.

Huilong Du, et al

Sequencing and de novo assembly of a near complete indica rice genome

Nature Communications.2017.

Xingfei Zheng,et al

Pedigree-based genome resequencing reveals genetic variation patterns of elite backbone varieties during modern rice improvement

Scientific Reports.2017.

Guogui Ning,et al

Hybrid sequencing and map finding (HySeMaFi): optional strategies for extensively deciphering gene splicing and expression in organisms without reference genome

Scientific Reports. 2017.

Guojun Wu,et al

Genomic Microdiversity of Bifidobacterium pseudocatenulatum Underlying Differential Strain-Level Responses to Dietary Carbohydrate Intervention

mBio.2017.

Tao shi,et al

The evolution of plant microRNAs—insights from a basal eudicot sacred lotus

The Plant Journal.2017.

LiXia Qin,et al

The cotton β-galactosyltransferase 1 (GalT1) that galactosylates arabinogalactan-proteins participates in controlling fiber development

The Plant Journal.2016.

Liyun Miao,et al

Transcriptome Analysis of Stem and Globally Comparison with Other Tissues in Brassica napus

Frontiers in Plant Science.2016.

Yukun Liu, et al

Influence of Endogenous and Exogenous Estrogenic Endocrine on Intestinal Microbiota in Zebrafish

PLoS one.2016,11(10):e0163895.

Geng Zhou, et al

Complete genome sequence of the Streptomyces sp_strain CdTB01, a bacterium tolerant to cadmium

Journal of Biotechnology. 2016, 229: 42-3.

Song tao Gui, et al

The mitochondrial genome map of Nelumbo nucifera reveals ancient evolutionary features

Scientific Reports. 2016, 6:30158.

Zhengwei Liu, et al

Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing

BMC Genomics. 2016, 17:466.

Shi L, et al

Long-read sequencing and de novo assembly of a Chinese genome

Nature Communications. 2016, 7: 12065.

Zhang J Y, et al

Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing

Stand Genomic Sci., 2016, 11: 11.

Wang l, et al

Complete chloroplast genome sequences of Eucommia ulmoides: genome structure and evolution

Tree Genetics & Genomes. 2016, 12: 12.

Han G, et al

Genome of Cnaphalocrocis medinalis Granulovirus, the First Crambidae-Infecting Betabaculovirus Isolated from Rice Leaffolder to Sequenced

PLoS One. 2016, 11: e0147882.

He D, et al

Genome-Wide Dissection of the MicroRNA Expression Profile in Rice Embryo during Early Stages of Seed Germination

PLoS One. 2015, 10: e0145424.

Yang H, et al

Phenolyzer: phenotype-based prioritization of candidate genes for human diseases

Nat Methods. 2015, 12: 841-3.

He M, et al

SeqHBase: a big data toolset for family based sequencing data analysis

J Med Genet. 2015, 52: 282-8.

Guo Y, et al

Enlight: web-based integration of GWAS results with biological annotations

Bioinformatics. 2015, 31: 275-6.

LOTUS-DB: an integrative and interactive database for Nelumbo nucifera study

Database (Oxford). 2015, 2015: bav023.

Li Y, et al

Complete mitochondrial genome of the medicinal fungus Ophiocordyceps sinensis

Sci Rep. 2015, 5: 13892.

Feng Z M, et al

Disturbance of the intestinal microbial community by ursolic acid contributes to its function as a regulator of fat deposition

Journal of Functional Foods. 2015(4), 14: 456-468.

Rang J, et al

Comparative analysis of genomics and proteomics in Bacillus thuringiensis 4_0718

PLoS One. 2015, 10 (3), e0119065.

Zhang D, et al

Complete Genome Sequence of Rhodococcus sp_ B7740, a Carotenoid-Producing Bacterium Isolated from the Arctic Sea

Genome Announc. 2015, 3 (2):e00333-15.

Yu Z, et al

Draft Genome Sequence of Pseudoalteromonas sp_Strain R3, a Red-Pigmented l-Amino Acid Oxidase-Producing Bacterium

Genome Announc. 2015, 3 (6): e01339-15.

Schahram Akbarian, et al

The PsychENCODE project

Nat Neurosci. 2015, 18 (12): 1707-12.

Guo Y, et al

SeqMule: automated pipeline for analysis of human exome/genome sequencing data

Sci Rep. 2015, 5 14283.

Yang H, et al

Genomic variant annotation and prioritization with ANNOVAR and wANNOVAR

Nat Protoc. 2015, 10 (10): 1556-66.

Hinch A G, et al

The landscape of recombination in African Americans

Nature. 2011, 476 (7359): 170-5.

乌云塔娜、杜红岩、李芳东、胡文臻、高瑞文、汪德鹏 等

《杜仲全基因组测序重要研究成果》

社会科学文献出版社,2014..

Wu Z H, et al

A precise chloroplast genome of Nelumbo nucifera (Nelumbonaceae) evaluated with Sanger, Illumina Miseq, and Pacbio RSII sequencing platforms: insight in to the plastid evolution of basal eudicots

BMC Plant Biology. 2014, 14:289.

Gan R, et al

DNA phosphorothioate modifications influence the global transcriptional response and protect DNA from double-stranded breaks

Sci Rep. 2014, 4 6642.

Yang J, et al

Exome sequencing identified NRG3 as a novel susceptible gene of Hirschsprung’s disease in a Chinese population

Mol Neurobiol. 2013, 47 (3): 957-66.

Zeng J, et al

Integration of transcriptome, proteome and metabolism data reveals the alkaloids biosynthesis in Macleaya cordata and Macleaya microcarpa

PLoS One. 2013, 8 (1): e53409.

Liu D, et al

The genome of Ganderma lucidum provide insights into triterpense biosynthesis and wood degradation

PloS one, 2012, 7(5): e36146..

Chen G K, et al

Mendel-GPU: haplotyping and genotype imputation on graphics processing units

Bioinformatics. 2012, 28 (22): 2979-80.

Chang X, et al

wANNOVAR: annotating genetic variants for personal genomes via the web

J Med Genet. 2012, 49 (7): 433-6.

Elia J, et al

Genome-wide copy number variation study associates metabotropic glutamate receptor gene networks with attention deficit hyperactivity disorder

Nat Genet. 2012, 44 (1): 78-84.

The International Multiple Sclerosis Genetics Consortium (IMSGC) and the Wellcome Trust Case Control Consortium 2 (WTCCC2), et al

Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis

Nature. 2011, 476 (7359): 214-9.

Integrative genomics identifies LMO1 as a neuroblastoma oncogene

Nature. 2011, 469:216-220.

Franke A, et al

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn’s disease susceptibility loci

Nat Genet. 2010, 42 (12): 1118-25.

Analysing biological pathways in genome-wide association studies

Nat Rev Genet. 2010, 11 (12): 843-54.

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

Nucleic Acids Res. 2010, 38 (16): e164.

Pinto D, et al

Functional impact of global rare copy number variation in autism spectrum disorders

Nature. 2010, 466 (7304): 368-72.

Strategies for genetic studies of complex diseases

Cell. 2010, 142 (3): 351-3.

Sleiman P M, et al

Variants of DENND1B associated with asthma in children

N Engl J Med. 2010, 362 (1): 36-44.

Imielinski M, et al

Common variants at five new loci associated with early-onset inflammatory bowel disease

Nature Genetics. 2009,41:1335-40.

Diskin SJ, et al

Copy number variation at 1q21_1 associated with neuroblastoma

Nature. 2009, 459: 987-991.

Glessner J T, et al

Autism genome-wide copy number variation reveals ubiquitin and neuronal genes

Nature. 2009, 459 (7246): 569-73.

Common genetic variants on 5p14_1 associate with autism spectrum disorders

Nature. 2009, 459 (7246): 528-33.

Jakobsson M, et al

Genotype, haplotype and copy-number variation in worldwide human populations

Nature. 2008, 451 (7181): 998-1003.

PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data

Genome Res. 2007, 17 (11): 1665-74.

The other side of staying out of a BIND

Nat Biotechnol. 2007, 25 (9): 971-2.

Comment on “evidence for positive epistasis in HIV 1”

Science. 2006, 312:848.

Gene-function wiki would let biologists pool worldwide resources

Nature. 2006, 439:534.

FSSA: a novel method for identifying functional signatures from structural alignments

Bioinformatics. 2005, 21 (13): 2969-77.